(*corresponding author)

Peer-reviewed, original research

Gyarmati P*, Kjellander C, Aust C, Song Y, Öhrmalm L, Giske CG. (2016) Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy-induced neutropenia. Sci Rep. 6:23532.

Halmos K, Gyarmati P, Xu H, Maimaiti S, Smith B (2015) Molecular and Functional Changes in Glucokinase Expression in the Brainstem Dorsal Vagal Complex in a Murine Model of Type 1 Diabetes. Neuroscience. S0306-4522(15)00755-1.

Gyarmati P*, Kjellander C, Aust A, Kalin M, Öhrmalm L, Giske CG (2015) Bacterial landscape of bloodstream infections in neutropenic patients via high throughput sequencing. PLOS ONE. 10(8):e0135756.

Boychuk CR1, Gyarmati P1, Xu H, Smith BN (2015) Glucose sensing by GABAergic neurons in the mouse nucleus tractus solitarius. J Neurophysiol, DOI 10.1152/jn.00310.2015. 1Equal contribution

Song Y, Giske CG, Gille-Johnson P, Emanuelsson O, Lundeberg J, Gyarmati P* (2014) Nuclease-assisted suppression of human DNA background in sepsis. PLOS One. 9(7):e103610.

Song Y, Gyarmati P, Araujo AC, Lundeberg J, Brumer H, Stahl PL (2014): Visual detection of DNA on paper chips. Anal Chem 86(3):1575-82.

Gyarmati P*, Song Y, Hallman J, Kaller M (2013): Chemical fragmentation for massively parallel library preparation. J Biotechnol, 168(1): 95-100.

Szeleczky Z, Balint A, Gyarmati P, Metreveli G, Dan A, Ursu K, Belak S, Lomniczi B, Kiss I. (2010):

Characterization of two low pathogenic avian influenza viruses isolated in Hungary in 2007.

Vet Microbiol. 145(1-2):142-7.

Kiss I; Balint A; Gyarmati P; et al (2010). Brief summary on the evolution of European influenza viruses; Cases in Hungary and Sweden. Hung Vet J 132: 1, 7-13.

Gyarmati P*, Metreveli G, Kecskemeti S, Rozsa M, Belak S, Kiss I (2009):

Molecular analysis and characterization of swine and human influenza viruses isolated in Hungary in 2006-2007.Virus Genes 36:186-92.

Yacoub A, Kiss I, Zohari S, Hakhverdyan M, Czifra G, Mohamed N, Gyarmati P, Blomberg J, Belak S.

The rapid molecular subtyping and pathotyping of avian influenza viruses (2009).

J Virol Methods. 156(1-2):157-61.

Zohari S, Gyarmati P, Thoren P, Czifra G, Bröjer C, Belak S, Berg M. (2008):

Genetic characterization of the NS gene indicates co-circulation of two sub-lineages of highly pathogenic avian influenza virus of H5N1 subtype in Northern Europe in 2006.Virus Genes. 36(1):117-25.

Gyarmati P*, Conze T, Zohari S, Leblanc N, Nilsson M, Landegren U, Baner J, Belak S. (2008):

Simultaneous genotyping of all hemagglutinin and neuraminidase subtypes of avian influenza viruses using padlock probes. J Clin Microbiol. 46(5):1747-51.

Kiss I, Gyarmati P, Zohari S, Wilbe Ramsay K, Metreveli G, Weiss E, Brytting M, Stivers M, Lindstrom S, Lundkvist A, Nemirov K, Thoren P, Berg M, Czifra G, Belak S. (2008):

Molecular characterization of highly pathogenic H5N1 avian influenza viruses isolated in Sweden in 2006. Virol J.6;5(1):113.

Zohari S, Gyarmati P, Ejdersund A, Berglöf U, Thoren P, Ehrenberg M, Czifra G, Belak S, Waldenström J, Olsen B, Berg M. (2008): Phylogenetic analysis of the non-structural (NS) gene of influenza A viruses isolated from mallards in Northern Europe in 2005. Virol J.12;5:147. Gyarmati P, Mohammed N, Norder H, Blomberg J, Belak S, Widen F. (2007):

Universal detection of hepatitis E virus by two real-time PCR assays: TaqMan and Primer-Probe Energy Transfer. J Virol Methods. 146(1-2):226-35.

Baner J, Gyarmati P, Yacoub A, Hakhverdyan M, Stenberg J, Ericsson O, Nilsson M, Landegren U, Belak S. (2007):

Microarray-based molecular detection of foot-and-mouth disease, vesicular stomatitis and swine vesicular disease viruses, using padlock probes. J Virol Methods. 143(2):200-6.

Book chapters, reviews

Gyarmati P: Severe acute respiratory syndrome (SARS) in Medical virology (2004), edited by Gyorgy Berencsi (Convention Budapest Kft) Berencsi, G; Gyarmati, P; Kis, Z 2005 Interrelationships of emerging bacterial and viral infections in Hungary before the introduction of active immunisation. EMERGING BIOLOGICAL THREATS Book Series: NATO SCIENCE SERIES, SUB-SERIES I: LIFE AND BEHAVIOURAL SCIENCES Volume: 370 Pages: 3-9

Saleh, YA; Gyarmati, P; Kis, Z; et al.2005 Coronavirus causing severe acute respiratory syndrome (SARS), a new highly infectious emerging threat. EMERGING BIOLOGICAL THREATS Book Series: NATO SCIENCE SERIES, SUB-SERIES I: LIFE AND BEHAVIOURAL SCIENCES Volume: 370 Pages: 50-57

Berencsi G, Gyarmati P, Szomor NK, Jankovics I, Csohan A (2005) Influenza vaccine development and production in Hungary. In: Strengthening Influenza pandemic preparedness through civil-military cooperation. Editors: James Neville and Oleg I Kisilev. IOS press, NATO Science Series. ISBN 1 58603 440 5.

Gyarmati P*, Belak S (2009) Implementation of molecular detection techniques in veterinary virology. VetScite 2009 March 31.

Total number of citations: 344

Reviewer/Editorial Works

Reviewer for the following journals: Journal of Virological Methods, PLOS ONE, Journal of Clinical Microbiology, European Journal of Clinical Microbiology & Infectious Diseases.

Major Funds Granted

2013 Jan-2015 Dec. Personal Investigator. Identification of causative agents and their antibiotic resistance in sepsis by cellulose array and high-throughput sequencing. Swedish Research Council (VR 2012-3291) 3.1 MSEK (¨480,000 USD).


  • Young Investigator Oral Presentation Award, American Society of Microbiology (2015).
  • Fellowship from the Hungarian-Swedish Scientific Society (2004 Jan-Jul)
  • Member of the Hungarian Microbiology Society, and the Society for Neuroscience.

Major Peer-Reviewed Presentations

Metagenomics landscape of bloodstream infections via high-throughput sequencing. General meeting, American Society for Microbiology, 2015 June 1, New Orleans, LA.

Effects of elevated glucose level on electrical properties of GABAergic neurons in the nucleus tractus solitarius. Society for Neuroscience, Annual Meeting 2010. San Diego, CA USA 2010 Nov 17.

Inhibition in the dorsal vagal complex is mediated by GABAergic glucose sensing neurons.UK Physiology Anniversary Lexington, KY USA 2010 Oct 15.

Microarray-based molecular detection of foot-and-mouth disease, vesicular stomatitis and swine vesicular disease viruses, using padlock probes. EPIZONE Annual meeting, Poland 2007 May 29-31

History of avian influenza. BVF Annual meeting, Uppsala, Sweden 2006 May 6

Relevant Courses

Teaching and learning in higher education (Karolinska Institutet, 2014)

Statistics in medicine (Stanford University, 2013)

Animal handling and biological safety training program (University of Kentucky, 2009)

Methodology in molecular medicine (Uppsala University, 2008)

Introduction to models of natural processes (Swedish University of Agriculture, 2006)